Progress and applications of single-cell sequencing techniques

Infect Genet Evol. 2020 Jun:80:104198. doi: 10.1016/j.meegid.2020.104198. Epub 2020 Jan 17.

Abstract

Single-cell sequencing (SCS) is a next-generation sequencing method that is mainly used to analyze differences in genetic and protein information between cells, to obtain genetic information on microorganisms that are difficult to cultivate at a single-cell level and to better understand their specific roles in the microenvironment. By sequencing the whole genome, transcriptome and epigenome of a single cell, the complex heterogeneous mechanisms involved in disease occurrence and progression can be revealed, further improving disease diagnosis, prognosis prediction and monitoring of the therapeutic effects of drugs. In this study, we mainly summarized the methods and application fields of SCS, which may provide potential references for its future clinical applications, including the analysis of embryonic and organ development, the immune system, cancer progression, and parasitic and infectious diseases as well as stem cell research, antibody screening, and therapeutic research and development.

Keywords: Application; Epigenetic sequencing; Single-cell sequencing; Whole-genome sequencing; Whole-transcriptome sequencing.

Publication types

  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Epigenesis, Genetic
  • Genome
  • Genomics / methods
  • High-Throughput Nucleotide Sequencing / methods*
  • Humans
  • Immunomagnetic Separation / methods
  • Microdissection / methods
  • Microfluidics / instrumentation
  • Microfluidics / methods
  • Organ Specificity
  • Sequence Analysis, DNA / methods
  • Single-Cell Analysis / methods*
  • Species Specificity
  • Transcriptome